AMTR_s00033p00127000 (ATDCL3, DCL3,...)

Aliases : ATDCL3, DCL3, evm_27.TU.AmTr_v1.0_scaffold00033.66

Description : RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00033p00127000

Target	Alias	Description	ECC score	Gene Family Method
AT5G45150	RTL3	RNAse THREE-like protein 3	0.03	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Aob_g12492	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Aob_g19967	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.05	OrthoFinder output from all 47 species
Aop_g06264	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Azfi_s0154.g053526	DCL1, CAF,...	not classified & original description: CDS=655-2703	0.03	OrthoFinder output from all 47 species
Ceric.01G108700.1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.32	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021135.41	No alias	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica	0.01	OrthoFinder output from all 47 species
Dac_g10602	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Dac_g43749	DCL1, CAF,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08330	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01030481001	ATRTL1, RTL1	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Gb_37867	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
LOC_Os09g14610.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Ore_g27169	DCL1, CAF,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29457	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Sam_g11612	No alias	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Sam_g52073	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc08g067210.3.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.03	OrthoFinder output from all 47 species
Zm00001e000158_P001	DCL1, CAF,...	endoribonuclease component DCL1 of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Zm00001e018890_P004	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.04	OrthoFinder output from all 47 species
Zm00001e041209_P001	DCL4, ATDCL4,...	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003689	DNA clamp loader activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0009360	DNA polymerase III complex	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	445	504
IPR003100	PAZ_dom	900	1030
IPR000999	RNase_III_dom	1284	1396
IPR000999	RNase_III_dom	1072	1204
IPR005034	Dicer_dimerisation_dom	576	664
IPR006935	Helicase/UvrB_N	33	199

External Links

No external refs found!

AMTR_s00033p00127000 (ATDCL3, DCL3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation