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  5. AMTR_s00032p00109160

AMTR_s00032p00109160 (BGAL8,...)


Aliases : BGAL8, evm_27.TU.AmTr_v1.0_scaffold00032.70

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000377 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00109160

Target Alias Description ECC score Gene Family Method Actions
Ehy_g16960 BGAL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01005849001 BGAL8 Beta-galactosidase 6 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
GSVIVT01018853001 BGAL3 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
Gb_41532 BGAL10 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g12730.1 BGAL1, LOC_Os02g12730 beta-galactosidase (BGAL) 0.04 OrthoFinder output from all 47 species
Ppi_g36004 BGAL9 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo269483 BGAL8 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
Solyc02g078950.4.1 BGAL8, Solyc02g078950 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
Tin_g27424 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 760 836
IPR001944 Glycoside_Hdrlase_35 34 338
No external refs found!