1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00030p00243810

AMTR_s00030p00243810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.217

Description : Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia


Gene families : OG0000192 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000192_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00243810
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00244570 SRE1, SIS4,... Secoisolariciresinol dehydrogenase (Fragment)... 0.05 OrthoFinder output from all 47 species
AT3G42960 ATA1, TA1, ASD TAPETUM 1 0.02 OrthoFinder output from all 47 species
Adi_g015388 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09505 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07560 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Gb_16803 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_30884 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_34140 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
MA_8197627g0010 No alias Zerumbone synthase OS=Zingiber zerumbet... 0.03 OrthoFinder output from all 47 species
MA_903039g0010 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g24700.1 No alias Zerumbone synthase OS=Zingiber zerumbet... 0.04 OrthoFinder output from all 47 species
Mp5g02670.1 No alias Zerumbone synthase OS=Zingiber zerumbet... 0.04 OrthoFinder output from all 47 species
Ppi_g12517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g018600.1.1 ATA1, TA1, ASD,... Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g40825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA

No InterPro domains available for this sequence

No external refs found!