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  5. AMTR_s00029p00125110

AMTR_s00029p00125110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.143

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.SINA-type E3 ligase


Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00125110
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT2G41980 No alias Protein with RING/U-box and TRAF-like domains 0.01 OrthoFinder output from all 47 species
AT5G53360 No alias TRAF-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G62800 No alias Protein with RING/U-box and TRAF-like domains 0.03 OrthoFinder output from all 47 species
Adi_g020944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110024 SINAT2 E3 ubiquitin ligase *(SINA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13757.t1 Aspi01Gene13757 E3 ubiquitin ligase *(SINA) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0069.g036509 No alias E3 ubiquitin ligase *(SINA) & original description: CDS=60-1088 0.03 OrthoFinder output from all 47 species
Cba_g14914 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30301 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g13370.1 LOC_Os01g13370 SINA-class E3 ligase 0.09 OrthoFinder output from all 47 species
Len_g31151 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g21220.1 SINAT2 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
Ppi_g05654 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49823 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g096020.4.1 Solyc01g096020 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc05g050580.3.1 Solyc05g050580 SINA-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc10g080570.2.1 SINAT2, Solyc10g080570 SINA-class E3 ligase 0.01 OrthoFinder output from all 47 species
Spa_g09486 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g37912 No alias E3 ubiquitin ligase *(SINA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016376_P001 Zm00001e016376 SINA-class E3 ligase 0.06 OrthoFinder output from all 47 species
Zm00001e035769_P001 Zm00001e035769 SINA-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006879 cellular iron ion homeostasis IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046916 cellular transition metal ion homeostasis IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 145 342
No external refs found!