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  5. AMTR_s00029p00102340

AMTR_s00029p00102340 (ATPRP40C, PRP40C,...)


Aliases : ATPRP40C, PRP40C, evm_27.TU.AmTr_v1.0_scaffold00029.99

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00102340

Target Alias Description ECC score Gene Family Method Actions
Aev_g19827 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Ala_g06832 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Cba_g01325 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ceric.13G036100.1 ATPRP40C,... pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g14070 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Dde_g16444 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g19140 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01010209001 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Len_g09020 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g02397 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species
Msp_g16215 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Ore_g35746 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g31060 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Sam_g10525 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Sam_g25068 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.05 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 751 798
IPR002713 FF_domain 687 732
IPR001202 WW_dom 459 486
IPR001202 WW_dom 512 538
No external refs found!