AMTR_s00029p00090770 (RABF2B, ATRAB-F2B,...)

Aliases : RABF2B, ATRAB-F2B, RAB-F2B, ATRABF2B, ARA7, ARA-7, ATRAB5B, evm_27.TU.AmTr_v1.0_scaffold00029.84

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.F-class RAB GTPase

Gene families : OG0001928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00029p00090770
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
AT5G45130	RAB5A, RHA1,...	RAB homolog 1	0.03	OrthoFinder output from all 47 species
Als_g22897	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.04	OrthoFinder output from all 47 species
Cba_g16971	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g00630	RABF2B,...	vesicle tethering small GTPase *(RAB5) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	12	171

External Links

No external refs found!