- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.5
Description : Transcription factor SRM1 OS=Arabidopsis thaliana
Gene families : OG0000160 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000160_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00029p00022290 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G38090 | No alias | Duplicated homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g021554 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g023961 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g075106 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g088904 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g11877 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g39083 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g61095 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g16613 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene17157.t2 | Aspi01Gene17157 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene17161.t1 | Aspi01Gene17161 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0087.g042383 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G074800.1 | Ceric.14G074800 | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g03626 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01005816001 | No alias | RNA biosynthesis.transcriptional activation.MYB... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007843001 | No alias | RNA biosynthesis.transcriptional activation.MYB... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_28483 | No alias | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g04930.1 | LOC_Os01g04930 | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g41900.1 | LOC_Os01g41900 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g63460.1 | LOC_Os01g63460 | transcription factor (MYB-related) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g37730.1 | LOC_Os05g37730 | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g15601 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04239 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09664 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g13729 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0034.g011276 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50035 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Smo84280 | No alias | RNA biosynthesis.transcriptional activation.MYB... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g096350.3.1 | Solyc03g096350 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g119740.3.1 | Solyc03g119740 | transcription factor (MYB-related) | 0.01 | OrthoFinder output from all 47 species | |
| Solyc06g076770.3.1 | Solyc06g076770 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g026680.2.1 | Solyc07g026680 | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g014250.3.1 | Solyc09g014250 | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g16329 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g49345 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g32216 | No alias | MYB-RELATED transcription factor *(MYB-R-R) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025784_P001 | Zm00001e025784 | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e031738_P001 | Zm00001e031738 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000145 | exocyst | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | HCCA |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006470 | protein dephosphorylation | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | HCCA |
| MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | HCCA |
| BP | GO:0015977 | carbon fixation | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| BP | GO:0016311 | dephosphorylation | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016746 | acyltransferase activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0016791 | phosphatase activity | IEP | HCCA |
| MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0022406 | membrane docking | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
| BP | GO:0048278 | vesicle docking | IEP | HCCA |
| BP | GO:0051640 | organelle localization | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0099023 | vesicle tethering complex | IEP | HCCA |
| BP | GO:0140029 | exocytic process | IEP | HCCA |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |