1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00028p00190780

AMTR_s00028p00190780 (OBE2,...)


Aliases : OBE2, evm_27.TU.AmTr_v1.0_scaffold00028.83

Description : OBERON-like protein OS=Nicotiana benthamiana


Gene families : OG0000521 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000521_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00028p00190780
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT3G07780 OBE1 Protein of unknown function (DUF1423) 0.03 OrthoFinder output from all 47 species
Adi_g066797 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g122453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30435 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Als_g58390 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Aop_g06279 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Aop_g23907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62567.t1 OBE2, Aspi01Gene62567 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0059.g034543 No alias transcriptional co-regulator *(Oberon) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0063.g035336 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037195 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Cba_g15338 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Dde_g03881 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02961 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g27694 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01030057001 OBE2 OBERON-like protein (Fragment) OS=Pisum sativum 0.03 OrthoFinder output from all 47 species
LOC_Os12g32980.1 OBE2, LOC_Os12g32980 OBERON-like protein OS=Nicotiana benthamiana... 0.03 OrthoFinder output from all 47 species
Len_g09574 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Len_g22745 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
MA_10294074g0010 No alias no description available(sp|q10pc5|tta1_orysj : 312.0) 0.03 OrthoFinder output from all 47 species
Msp_g14069 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g29630 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Ore_g05055 OBE2 transcriptional co-regulator *(Oberon) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g10255 OBE1 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g018500.3.1 Solyc05g018500 Protein OBERON 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g08413 OBE1 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Spa_g30885 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR004082 OBERON 123 615
No external refs found!