AMTR_s00027p00248120 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.162

Description : Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana


Gene families : OG0001071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001071_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00248120

Target Alias Description ECC score Gene Family Method Actions
Adi_g063969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21238 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g10624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01377 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g038900 No alias not classified & original description: CDS=1-2622 0.04 OrthoFinder output from all 47 species
Cba_g04040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01881 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g00726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_66164g0010 No alias Uncharacterized TPR repeat-containing protein At2g32450... 0.03 OrthoFinder output from all 47 species
Msp_g08410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26839 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03238 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g10333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007314 No alias not classified & original description: CDS=1-2406 0.02 OrthoFinder output from all 47 species
Sam_g18598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo440495 No alias Uncharacterized TPR repeat-containing protein At1g05150... 0.02 OrthoFinder output from all 47 species
Spa_g08300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15397 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR013105 TPR_2 237 267
IPR013105 TPR_2 313 345
No external refs found!