AMTR_s00026p00244220 (BP, BP1, KNAT1,...)

Aliases : BP, BP1, KNAT1, evm_27.TU.AmTr_v1.0_scaffold00026.137

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00026p00244220
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.05	OrthoFinder output from all 47 species
Als_g13096	BUM1, SHL, STM,...	BEL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47386	KNAT5	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Lfl_g12242	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g62008	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10115	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020608	KNAT5	KNOX-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	136	179
IPR005539	ELK_dom	280	301
IPR008422	Homeobox_KN_domain	320	359
IPR005541	KNOX2	190	237

External Links

No external refs found!

AMTR_s00026p00244220 (BP, BP1, KNAT1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation