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  5. AMTR_s00025p00232880

AMTR_s00025p00232880 (HCF173,...)


Aliases : HCF173, evm_27.TU.AmTr_v1.0_scaffold00025.342

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein


Gene families : OG0006399 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00232880
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.03 OrthoFinder output from all 47 species
Als_g18490 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05244 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Aop_g05654 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Cba_g03951 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Ceric.24G028300.1 HCF173, Ceric.24G028300 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Dac_g00930 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01029443001 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Gb_02290 HCF173 HCF173 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
LOC_Os06g49120.1 HCF173, LOC_Os06g49120 HCF173 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Msp_g10500 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g01268 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Ppi_g16606 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Solyc08g016080.3.1 HCF173, Solyc08g016080 HCF173 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Spa_g26192 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Tin_g01089 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013206_P002 HCF173, Zm00001e013206 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003913 DNA photolyase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 287 382
No external refs found!