AMTR_s00024p00151670 (GAD, GAD1,...)

Aliases : GAD, GAD1, evm_27.TU.AmTr_v1.0_scaffold00024.104

Description : Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase

Gene families : OG0000690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000690_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00151670
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00142920	GAD, GAD1,...	Amino acid metabolism.biosynthesis.glutamate...	0.04	OrthoFinder output from all 47 species
AT1G65960	GAD2	glutamate decarboxylase 2	0.03	OrthoFinder output from all 47 species
Aspi01Gene69537.t1	GAD, GAD1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g35431	GAD5	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g13300.1	GAD, GAD1, LOC_Os03g13300	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
LOC_Os04g37500.1	GAD, GAD1, LOC_Os04g37500	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
MA_89828g0010	GAD, GAD1	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Msp_g47156	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g07461	GAD2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17072	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020087	GAD4	glutamate decarboxylase *(GAD) & original description:...	0.02	OrthoFinder output from all 47 species
Solyc01g005000.3.1	GAD4, Solyc01g005000	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Zm00001e038628_P001	GAD, GAD1, Zm00001e038628	Glutamate decarboxylase 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	HCCA
MF	GO:0003913	DNA photolyase activity	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
BP	GO:0015939	pantothenate metabolic process	IEP	HCCA
BP	GO:0015940	pantothenate biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	33	381

External Links

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AMTR_s00024p00151670 (GAD, GAD1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation