AMTR_s00024p00145270 (GAD, GAD1,...)

Aliases : GAD, GAD1, evm_27.TU.AmTr_v1.0_scaffold00024.94

Description : Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase

Gene families : OG0000690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000690_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00145270
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AT2G02010	GAD4	glutamate decarboxylase 4	0.03	OrthoFinder output from all 47 species
AT5G17330	GAD, GAD1	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Adi_g074621	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g106946	GAD2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10283	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g30786	GAD, GAD1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g67819	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.25G021000.1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g01418	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g10197	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19879	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g39486	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g10779	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011564001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.06	OrthoFinder output from all 47 species
LOC_Os04g37460.1	GAD, GAD1, LOC_Os04g37460	glutamate decarboxylase	0.02	OrthoFinder output from all 47 species
Len_g08076	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g28758	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g22346	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
MA_1610g0010	GAD4	glutamate decarboxylase	0.05	OrthoFinder output from all 47 species
MA_65512g0010	GAD3	Glutamate decarboxylase OS=Petunia hybrida...	0.03	OrthoFinder output from all 47 species
MA_89828g0010	GAD, GAD1	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Nbi_g09361	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g41329	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g45178	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g30214	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17193	No alias	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g098240.3.1	GAD, GAD1, Solyc03g098240	glutamate decarboxylase	0.02	OrthoFinder output from all 47 species
Spa_g05104	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g12089	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g12090	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g17654	GAD2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g55008	GAD2	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g06998	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e005503_P001	GAD, GAD1, Zm00001e005503	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Zm00001e007980_P003	GAD2, Zm00001e007980	glutamate decarboxylase	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	HCCA
MF	GO:0004357	glutamate-cysteine ligase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	45	323

External Links

No external refs found!

AMTR_s00024p00145270 (GAD, GAD1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation