AMTR_s00024p00142920 (GAD, GAD1,...)

Aliases : GAD, GAD1, evm_27.TU.AmTr_v1.0_scaffold00024.92

Description : Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase

Gene families : OG0000690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000690_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00142920
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00151670	GAD, GAD1,...	Amino acid metabolism.biosynthesis.glutamate...	0.04	OrthoFinder output from all 47 species
AT1G65960	GAD2	glutamate decarboxylase 2	0.04	OrthoFinder output from all 47 species
AT2G02000	GAD3	glutamate decarboxylase 3	0.03	OrthoFinder output from all 47 species
AT2G02010	GAD4	glutamate decarboxylase 4	0.04	OrthoFinder output from all 47 species
AT5G17330	GAD, GAD1	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Ala_g18805	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g01711	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g63120	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene12693.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene37978.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene69538.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g32572	GAD, GAD1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g19880	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g39486	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g10779	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g11785	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g35431	GAD5	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01011564001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.03	OrthoFinder output from all 47 species
GSVIVT01011565001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.04	OrthoFinder output from all 47 species
Gb_38320	GAD, GAD1	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
LOC_Os03g13300.1	GAD, GAD1, LOC_Os03g13300	glutamate decarboxylase	0.06	OrthoFinder output from all 47 species
LOC_Os03g51080.1	GAD, GAD1, LOC_Os03g51080	glutamate decarboxylase	0.06	OrthoFinder output from all 47 species
Len_g20416	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Len_g28758	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g22346	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10428419g0010	GAD, GAD1	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_1610g0010	GAD4	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
MA_89828g0010	GAD, GAD1	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Mp3g23860.1	GAD, GAD1	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Nbi_g09361	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06503	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g41329	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g61216	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30214	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007078	GAD2	glutamate decarboxylase *(GAD) & original description:...	0.04	OrthoFinder output from all 47 species
Solyc01g005000.3.1	GAD4, Solyc01g005000	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Solyc03g098240.3.1	GAD, GAD1, Solyc03g098240	glutamate decarboxylase	0.05	OrthoFinder output from all 47 species
Solyc04g025530.3.1	GAD4, Solyc04g025530	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Solyc05g054050.4.1	GAD, GAD1, Solyc05g054050	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Solyc11g011920.2.1	GAD, GAD1, Solyc11g011920	glutamate decarboxylase	0.06	OrthoFinder output from all 47 species
Spa_g05104	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g12090	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005503_P001	GAD, GAD1, Zm00001e005503	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Zm00001e038628_P001	GAD, GAD1, Zm00001e038628	Glutamate decarboxylase 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003756	protein disulfide isomerase activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008378	galactosyltransferase activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	39	374

External Links

No external refs found!

AMTR_s00024p00142920 (GAD, GAD1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation