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  5. AMTR_s00024p00139650

AMTR_s00024p00139650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.87

Description : Secondary metabolism.nitrogen-containing secondary compounds.alkaloids.indole alkaloid synthesis.aromatic L-amino acid decarboxylase


Gene families : OG0003989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00139650

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00231980 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00055440 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.04 OrthoFinder output from all 47 species
AMTR_s00092p00059730 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.03 OrthoFinder output from all 47 species
AT2G20340 No alias Pyridoxal phosphate (PLP)-dependent transferases... 0.05 OrthoFinder output from all 47 species
LOC_Os05g43510.1 LOC_Os05g43510 aromatic L-amino acid decarboxylase 0.05 OrthoFinder output from all 47 species
LOC_Os08g04540.1 LOC_Os08g04540 aromatic L-amino acid decarboxylase 0.05 OrthoFinder output from all 47 species
LOC_Os10g23900.1 LOC_Os10g23900 aromatic L-amino acid decarboxylase 0.04 OrthoFinder output from all 47 species
LOC_Os10g26110.1 LOC_Os10g26110 aromatic L-amino acid decarboxylase 0.03 OrthoFinder output from all 47 species
Solyc07g054280.1.1 Solyc07g054280 aromatic L-amino acid decarboxylase 0.04 OrthoFinder output from all 47 species
Zm00001e000632_P001 Zm00001e000632 aromatic L-amino acid decarboxylase 0.03 OrthoFinder output from all 47 species
Zm00001e000634_P001 Zm00001e000634 aromatic L-amino acid decarboxylase 0.02 OrthoFinder output from all 47 species
Zm00001e021101_P001 Zm00001e021101 aromatic L-amino acid decarboxylase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016831 carboxy-lyase activity IEA Interproscan
BP GO:0019752 carboxylic acid metabolic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 303 373
IPR002129 PyrdxlP-dep_de-COase 172 302
IPR002129 PyrdxlP-dep_de-COase 51 170
No external refs found!