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  5. AMTR_s00022p00253640

AMTR_s00022p00253640 (ATCCD1, CCD1, NCED1,...)


Aliases : ATCCD1, CCD1, NCED1, ATNCED1, evm_27.TU.AmTr_v1.0_scaffold00022.401

Description : Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase


Gene families : OG0000239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000239_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00253640

Target Alias Description ECC score Gene Family Method Actions
Ala_g04422 CCD4, NCED4 EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Aob_g17438 NCED3, SIS7,... EC_1.13 oxidoreductase acting on single donor with... 0.03 OrthoFinder output from all 47 species
Dcu_g03912 ATCCD1, CCD1,... EC_1.13 oxidoreductase acting on single donor with... 0.04 OrthoFinder output from all 47 species
Dde_g23816 CCD4, NCED4 EC_1.13 oxidoreductase acting on single donor with... 0.03 OrthoFinder output from all 47 species
LOC_Os12g44310.1 ATCCD1, CCD1,... carotenoid cleavage dioxygenase (CCD1) 0.02 OrthoFinder output from all 47 species
Ore_g10877 NCED3, SIS7,... EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Pir_g14052 NCED3, SIS7,... EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003802 CCD4, NCED4 EC_1.13 oxidoreductase acting on single donor with... 0.02 OrthoFinder output from all 47 species
Smo165469 ATCCD1, CCD1,... Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
Smo272067 ATCCD1, CCD1,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Tin_g08721 ATCCD1, CCD1,... EC_1.13 oxidoreductase acTing on single donor with... 0.02 OrthoFinder output from all 47 species
Zm00001e038960_P002 ATCCD1, CCD1,... carotenoid cleavage dioxygenase (CCD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 1 429
No external refs found!