1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00022p00238000

AMTR_s00022p00238000 (BBM,...)


Aliases : BBM, evm_27.TU.AmTr_v1.0_scaffold00022.332

Description : RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor


Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00238000
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00028460 BBM,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00101p00022740 WRI1, ATWRI1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Aop_g40928 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Ceric.32G008600.1 BBM, Ceric.32G008600 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dac_g09110 BBM AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g33754 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g41387 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Gb_20525 DRG, CKC, CKC1, ANT transcription factor (AP2) 0.01 OrthoFinder output from all 47 species
Gb_29561 No alias transcription factor (AP2) 0.01 OrthoFinder output from all 47 species
LOC_Os07g13170.2 RAP2.7, TOE1,... transcription factor (AP2) 0.02 OrthoFinder output from all 47 species
MA_30905g0010 WRI1, ATWRI1, ASML1, WRI transcription factor (AP2) 0.04 OrthoFinder output from all 47 species
MA_32193g0010 DRG, CKC, CKC1, ANT no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g29022 No alias AP2-type transcription factor *(WRI/AIL) & original... 0.01 OrthoFinder output from all 47 species
Nbi_g35194 AP2, FLO2, FL1 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Spa_g28499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38473 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species
Spa_g38474 PLT2 AP2-type transcription factor *(WRI/AIL) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 292 324
No external refs found!