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  5. AMTR_s00022p00215770

AMTR_s00022p00215770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00022.258

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.BRX1 assembly factor


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00022p00215770

Target Alias Description ECC score Gene Family Method Actions
AT3G15460 No alias Ribosomal RNA processing Brix domain protein 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037831 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Cba_g03850 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.16 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g095400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Dac_g07263 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g13208 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
Dde_g08981 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01028448001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Gb_30311 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.07 OrthoFinder output from all 47 species
Len_g16692 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.04 OrthoFinder output from all 47 species
MA_14692g0010 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.05 OrthoFinder output from all 47 species
Mp4g04670.1 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.03 OrthoFinder output from all 47 species
Ore_g29098 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Sam_g14955 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Sam_g52557 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Solyc04g016380.3.1 Solyc04g016380 BRX1 assembly factor involved in ITS1 rRNA removal 0.06 OrthoFinder output from all 47 species
Tin_g03875 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 56 249
No external refs found!