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  5. AMTR_s00021p00236970

AMTR_s00021p00236970 (emb1796,...)


Aliases : emb1796, evm_27.TU.AmTr_v1.0_scaffold00021.242

Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0010708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010708_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00021p00236970

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023159001 GRP23 Pentatricopeptide repeat-containing protein At1g10270... 0.05 OrthoFinder output from all 47 species
Gb_33747 emb1796 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g30240.1 GRP23, LOC_Os05g30240 Pentatricopeptide repeat-containing protein At1g10270... 0.03 OrthoFinder output from all 47 species
LOC_Os11g24570.1 emb1796, LOC_Os11g24570 Pentatricopeptide repeat-containing protein At3g49240,... 0.03 OrthoFinder output from all 47 species
MA_118904g0010 emb1796 Pentatricopeptide repeat-containing protein At1g10270... 0.09 OrthoFinder output from all 47 species
Solyc01g103160.3.1 GRP23, Solyc01g103160 Pentatricopeptide repeat-containing protein At1g10270... 0.04 OrthoFinder output from all 47 species
Solyc03g083280.4.1 emb1796, Solyc03g083280 Pentatricopeptide repeat-containing protein At3g49240,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0015093 ferrous iron transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 408 437
IPR002885 Pentatricopeptide_repeat 229 255
IPR002885 Pentatricopeptide_repeat 292 323
IPR002885 Pentatricopeptide_repeat 440 489
IPR002885 Pentatricopeptide_repeat 154 203
IPR002885 Pentatricopeptide_repeat 339 384
No external refs found!