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  5. AMTR_s00021p00196260

AMTR_s00021p00196260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.159

No description available


Gene families : OG0006897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00196260
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Adi_g012549 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g01409 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g18581 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08298 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021140001 No alias No description available 0.02 OrthoFinder output from all 47 species
Len_g09394 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04873 No alias thylakoid biogenesis factor *(ANU10) & original description: none 0.05 OrthoFinder output from all 47 species
MA_94840g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g01900.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc03g006280.4.1 Solyc03g006280 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e013427_P001 Zm00001e013427 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!