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  5. AMTR_s00021p00185830

AMTR_s00021p00185830 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.145

Description : Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0002241 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00185830

Target Alias Description ECC score Gene Family Method Actions
Adi_g050822 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020652001 No alias Putative elongation factor TypA-like SVR3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g01863 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02041 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024378 No alias not classified & original description: CDS=158-2161 0.03 OrthoFinder output from all 47 species
Solyc07g053470.4.1 Solyc07g053470 Putative elongation factor TypA-like SVR3, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 279 353
IPR000640 EFG_V-like 460 540
IPR000795 T_Tr_GTP-bd_dom 61 255
No external refs found!