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  5. AMTR_s00021p00059810

AMTR_s00021p00059810 (PEPC1, ATPEPC1,...)


Aliases : PEPC1, ATPEPC1, ATPPC1, PPC1, evm_27.TU.AmTr_v1.0_scaffold00021.28

Description : Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate (PEP) carboxylase activity.PEP carboxylase


Gene families : OG0000643 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000643_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00059810
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G53310 PEPC1, ATPEPC1,... phosphoenolpyruvate carboxylase 1 0.04 OrthoFinder output from all 47 species
Adi_g079611 PPC2, ATPPC2 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01187 ATPPC4, PPC4 PEP carboxylase *(PPC) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09049 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0091.g042910 PEPC1, ATPEPC1,... EC_4.1 carbon-carbon lyase & original description: CDS=48-2978 0.02 OrthoFinder output from all 47 species
Cba_g14717 PEPC1, ATPEPC1,... EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g02366 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04041 ATPPC4, PPC4 PEP carboxylase *(PPC) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g02050.1 ATPPC4, PPC4,... PEP carboxylase 0.02 OrthoFinder output from all 47 species
LOC_Os02g14770.1 PPC2, ATPPC2,... PEP carboxylase 0.02 OrthoFinder output from all 47 species
MA_10430987g0010 ATPPC3, PPC3 PEP carboxylase 0.03 OrthoFinder output from all 47 species
MA_10435515g0010 PEPC1, ATPEPC1,... Phosphoenolpyruvate carboxylase OS=Picea abies... 0.03 OrthoFinder output from all 47 species
Mp1g11340.1 PPC2, ATPPC2 PEP carboxylase 0.04 OrthoFinder output from all 47 species
Msp_g37348 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Smo111216 PEPC1, ATPEPC1,... Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate... 0.03 OrthoFinder output from all 47 species
Smo148941 ATPPC4, PPC4 Photosynthesis.CAM/C4 photosynthesis.phosphoenolpyruvate... 0.03 OrthoFinder output from all 47 species
Tin_g04167 ATPPC3, PPC3 EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014333_P001 ATPPC3, PPC3,... PEP carboxylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021135 PEP_COase 163 965
No external refs found!