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  5. AMTR_s00020p00230290

AMTR_s00020p00230290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00020.101

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase-activating protein (RAB-GAP)


Gene families : OG0004419 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004419_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00020p00230290
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Aop_g12316 No alias Rab GTPase-activating protein & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g30880.1 LOC_Os04g30880 RAB-GTPase-activating protein (RAB-GAP) 0.02 OrthoFinder output from all 47 species
Ppi_g01167 No alias Rab GTPase-activating protein & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025487 No alias Rab GTPase-activating protein & original description:... 0.02 OrthoFinder output from all 47 species
Tin_g45965 No alias Rab GTPase-activaTing protein & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR000195 Rab-GTPase-TBC_dom 231 424
No external refs found!