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  5. AMTR_s00017p00035550

AMTR_s00017p00035550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00017.13

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00017p00035550
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g010474 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040816 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086308 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088075 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22689 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07427 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07321 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06134.t1 AtTCP14, TCP14,... TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g02339 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33873 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07512 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02594 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26686 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g14380.1 LOC_Os01g14380 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g69980.1 AT-TCP20, TCP20,... transcription factor (TCP). TCP20 circadian clock... 0.02 OrthoFinder output from all 47 species
LOC_Os08g43160.1 LOC_Os08g43160 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
LOC_Os12g07480.1 LOC_Os12g07480 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Len_g15010 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25174 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_635g0010 AtTCP14, TCP14 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
MA_96244g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g13562 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02433 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06765 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06948 AT-TCP20, TCP20,... circadian clock activation factor *(TCP20) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g09866 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27780 No alias TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016510 No alias TCP-type transcription factor & original description: CDS=1-2211 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024570 No alias TCP-type transcription factor & original description: CDS=1-1014 0.03 OrthoFinder output from all 47 species
Sam_g26260 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g103780.4.1 Solyc01g103780 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Solyc11g020670.1.1 Solyc11g020670 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Spa_g50970 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 111 216
No external refs found!