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  5. AMTR_s00016p00166750

AMTR_s00016p00166750 (CCL,...)


Aliases : CCL, evm_27.TU.AmTr_v1.0_scaffold00016.125

Description : Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR regulation.LIR1 protein


Gene families : OG0007865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00166750
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cba_g26580 CCL regulatory protein *(LIR1) of ferredoxin-NADP... 0.02 OrthoFinder output from all 47 species
Ceric.17G033800.1 Ceric.17G033800 regulatory protein *(LIR1) of ferredoxin-NADP... 0.03 OrthoFinder output from all 47 species
Ceric.21G010900.1 Ceric.21G010900 not classified & original description: pacid=50603807... 0.03 OrthoFinder output from all 47 species
GSVIVT01004944001 CCL Photosynthesis.photophosphorylation.linear electron... 0.03 OrthoFinder output from all 47 species
LOC_Os01g01340.1 CCL, LOC_Os01g01340 LIR1 protein involved in ferredoxin-NADP oxidoreductase... 0.06 OrthoFinder output from all 47 species
Lfl_g06887 CCL regulatory protein *(LIR1) of ferredoxin-NADP... 0.03 OrthoFinder output from all 47 species
Ore_g04797 CCL regulatory protein *(LIR1) of ferredoxin-NADP... 0.02 OrthoFinder output from all 47 species
Sam_g26362 No alias regulatory protein *(LIR1) of ferredoxin-NADP... 0.02 OrthoFinder output from all 47 species
Spa_g03469 CCL regulatory protein *(LIR1) of ferredoxin-NADP... 0.04 OrthoFinder output from all 47 species
Spa_g03470 CCL regulatory protein *(LIR1) of ferredoxin-NADP... 0.02 OrthoFinder output from all 47 species
Zm00001e017178_P001 CCL, Zm00001e017178 LIR1 protein involved in ferredoxin-NADP oxidoreductase... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR009856 Lir1 26 125
No external refs found!