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  5. AMTR_s00016p00122150

AMTR_s00016p00122150 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.83

Description : Light-induced protein, chloroplastic OS=Solanum tuberosum


Gene families : OG0002240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00122150
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT4G04020 FIB fibrillin 0.03 OrthoFinder output from all 47 species
Aev_g39447 No alias Fibrillin plastoglobule core protein *(FBN1/2) &... 0.02 OrthoFinder output from all 47 species
Als_g48636 No alias Fibrillin plastoglobule core protein *(FBN1/2) &... 0.03 OrthoFinder output from all 47 species
Aob_g19875 No alias Fibrillin plastoglobule core protein *(FBN1/2) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene48670.t1 FIB, Aspi01Gene48670 Fibrillin plastoglobule core protein *(FBN1/2) &... 0.03 OrthoFinder output from all 47 species
Dac_g17027 FIB Fibrillin plastoglobule core protein *(FBN1/2) &... 0.02 OrthoFinder output from all 47 species
Gb_21445 No alias Plastid lipid-associated protein 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Ppi_g62338 No alias Fibrillin plastoglobule core protein *(FBN8) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g081170.4.1 FIB, Solyc02g081170 Light-induced protein, chloroplastic OS=Solanum... 0.02 OrthoFinder output from all 47 species
Zm00001e040997_P002 Zm00001e040997 Probable plastid-lipid-associated protein 2,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR006843 PAP/fibrillin_dom 3 145
No external refs found!