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  5. AMTR_s00016p00074040

AMTR_s00016p00074040 (CCB1,...)


Aliases : CCB1, evm_27.TU.AmTr_v1.0_scaffold00016.38

Description : Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component


Gene families : OG0006907 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006907_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00074040

Target Alias Description ECC score Gene Family Method Actions
AT3G26710 CCB1 cofactor assembly of complex C 0.06 OrthoFinder output from all 47 species
Adi_g015559 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Adi_g089508 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Aev_g08263 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Ala_g12011 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Als_g54717 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.08 OrthoFinder output from all 47 species
Aob_g20691 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Aop_g06853 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65930.t2 CCB1, Aspi01Gene65930 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Azfi_s0436.g069940 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.06 OrthoFinder output from all 47 species
Cba_g10743 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Ceric.22G072900.1 CCB1, Ceric.22G072900 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species
Cre16.g662150 CCB1 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.05 OrthoFinder output from all 47 species
Dac_g22896 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.07 OrthoFinder output from all 47 species
Dcu_g02462 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Dde_g16667 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Ehy_g22554 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.06 OrthoFinder output from all 47 species
GSVIVT01032980001 CCB1 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.09 OrthoFinder output from all 47 species
Gb_25718 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
LOC_Os11g32320.1 CCB1, LOC_Os11g32320 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Len_g01063 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Lfl_g35581 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.06 OrthoFinder output from all 47 species
MA_10429833g0010 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Mp4g15480.1 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Nbi_g14152 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.08 OrthoFinder output from all 47 species
Ore_g11194 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.06 OrthoFinder output from all 47 species
Pir_g15644 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Pnu_g07222 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Ppi_g30079 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.02 OrthoFinder output from all 47 species
Sam_g18985 No alias assembly factor CCB1 of CCB cytochrome b6 maturation... 0.05 OrthoFinder output from all 47 species
Sam_g18986 No alias assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species
Smo99402 CCB1 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.03 OrthoFinder output from all 47 species
Solyc02g005210.3.1 CCB1, Solyc02g005210 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.03 OrthoFinder output from all 47 species
Tin_g24718 CCB1 assembly factor CCB1 of CCB cytochrome b6 maturation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR021919 CCB1 73 247
No external refs found!