Sequence Description Alias PCC hrr AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9478143703448098 7 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.9367319570632838 3 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9363612611105544 18 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.9355928026445928 4 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9352470242117651 5 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease CRB, HIP1.3, CSP41B, evm_27.TU.AmTr_v1.0_scaffold00003.202 0.9318134952696076 10 AMTR_s00011p00231930 Pheophytinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.113 0.929520431645056 7 AMTR_s00059p00208110 Photosynthesis.photophosphorylation.cytochrome b6/f complex.component PetM/VII evm_27.TU.AmTr_v1.0_scaffold00059.240 0.9287608882234623 8 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGB, SIG2, SIGA, SIG1, RPOD1, evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9272159760781074 11 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 NDF5, evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9236456840666307 19 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9226330961102396 11 AMTR_s00031p00080280 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.31 0.9189354896460921 12 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC PGR1, PETC, evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9169642377516225 36 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor HCF164, evm_27.TU.AmTr_v1.0_scaffold00059.198 0.9168615312689405 14 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.9165124263467676 17 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.915622392719155 16 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9147865417618791 29 AMTR_s00003p00105430 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase scpl33, evm_27.TU.AmTr_v1.0_scaffold00003.71 0.91382518509801 18 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein TROL, evm_27.TU.AmTr_v1.0_scaffold00015.112 0.9135408276857949 19 AMTR_s00119p00059930 Cell wall.cutin and suberin.cutin polyester synthesis.BDG-type lysophospholipase evm_27.TU.AmTr_v1.0_scaffold00119.40 0.9134977104839318 20 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9130587572638439 42 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9124946270010241 25 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana RFL1, evm_27.TU.AmTr_v1.0_scaffold00203.3 0.9109270391065346 23 AMTR_s00092p00162140 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR PSBR, evm_27.TU.AmTr_v1.0_scaffold00092.138 0.9097636074034913 24 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9091106227995988 28 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9087783034908421 32 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component CRR23, evm_27.TU.AmTr_v1.0_scaffold00010.88 0.9084976826350231 27 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9080256077434319 28 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.907216924622927 29 AMTR_s00057p00221950 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase BGLU11, evm_27.TU.AmTr_v1.0_scaffold00057.290 0.9049078283750047 30 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.903425510861219 35 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.903421934723235 32 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana VAR3, evm_27.TU.AmTr_v1.0_scaffold00119.41 0.9032272200058369 33 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component ALB3, evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9002082785710345 64 AMTR_s00069p00149060 evm_27.TU.AmTr_v1.0_scaffold00069.116 0.8988493253193051 35 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8986955466229689 36 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.8984094344093772 60 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein EMB1956, Hsp88.1, HSP90.5, AtHsp90.5, CR88, evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8977673559077616 51 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8956669889007803 39 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21 0.8946759703470005 77 AMTR_s00070p00197870 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (AKT/SKOR/GORK-type) AKT3, AKT2/3, AKT2, KT2/3, evm_27.TU.AmTr_v1.0_scaffold00070.132 0.8940666683337953 41 AMTR_s00181p00020940 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen CYP71B2, evm_27.TU.AmTr_v1.0_scaffold00181.7 0.8937908647939199 42 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component ACSF, CHL27, CRD1, evm_27.TU.AmTr_v1.0_scaffold00095.88 0.8932141289465826 59 AMTR_s00068p00127460 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana TIC55-IV, ACD1-LIKE, PTC52, evm_27.TU.AmTr_v1.0_scaffold00068.87 0.8927015639348174 44 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase EMB2761, evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8923164857546514 45 AMTR_s00004p00133000 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR42 evm_27.TU.AmTr_v1.0_scaffold00004.127 0.8920266512629914 46 AMTR_s00006p00263750 Disease resistance protein RPM1 OS=Arabidopsis thaliana HRT, RCY1, RPP8, evm_27.TU.AmTr_v1.0_scaffold00006.254 0.8918777583574846 47 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8913633470137878 53 AMTR_s00024p00252900 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor evm_27.TU.AmTr_v1.0_scaffold00024.352 0.8903944327980018 49 AMTR_s00007p00259840 evm_27.TU.AmTr_v1.0_scaffold00007.320 0.8882719404124121 51 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase ATHDA14, hda14, evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8875881340455588 81 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.8873477914770392 53 AMTR_s00130p00027180 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00130.6 0.8868691609977414 54 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.8867177171241807 55 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.88647418380377 56 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.8863378103920653 66 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease SPPA1, SPPA, evm_27.TU.AmTr_v1.0_scaffold00006.223 0.8862101966409917 58 AMTR_s00022p00051940 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor NPL1, PHOT2, evm_27.TU.AmTr_v1.0_scaffold00022.32 0.884903532273406 59 AMTR_s00001p00173570 Protein modification.S-glutathionylation and deglutathionylation.glutathione S-transferase activities.class phi GSTF11, ATGSTF6, ATGSTF11, evm_27.TU.AmTr_v1.0_scaffold00001.162 0.8847262314771275 60 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8839544780223482 61 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component PGR5-LIKE A, evm_27.TU.AmTr_v1.0_scaffold00001.191 0.8831733181999947 87 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter MEX1, RCP1, evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8828080571366295 63 AMTR_s00001p00262580 Cellular respiration.glycolysis.cytosolic glycolysis.phosphoglycerate mutase evm_27.TU.AmTr_v1.0_scaffold00001.387 0.8827643749313338 64 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component NDH48, NDF1, evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8819939901374391 65 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase ATSKL1, SKL1, evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8809500160247136 66 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component RPL27, evm_27.TU.AmTr_v1.0_scaffold00013.7 0.8807408419182543 67 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein ZKT, evm_27.TU.AmTr_v1.0_scaffold00004.48 0.8788560798759432 82 AMTR_s00149p00064300 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase BGLU12, evm_27.TU.AmTr_v1.0_scaffold00149.41 0.8783727873892706 69 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.8783533513243468 80 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.8765649845868836 71 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana CRR22, evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8764985225295349 98 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease ATEGY2, EGY2, evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8762400971385947 100 AMTR_s00045p00119660 evm_27.TU.AmTr_v1.0_scaffold00045.117 0.8751645980304282 76 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.8745871774328523 86 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.8739454273676759 99 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component ATCNFU3, NFU3, evm_27.TU.AmTr_v1.0_scaffold00019.332 0.873628758737155 79 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8734016903002007 80 AMTR_s00049p00092560 Protein modification.phosphorylation.TKL kinase superfamily.LRR-I kinase evm_27.TU.AmTr_v1.0_scaffold00049.63 0.8730582983822832 82 AMTR_s00022p00112770 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component evm_27.TU.AmTr_v1.0_scaffold00022.100 0.8726261624583573 83 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8723296535226066 84 AMTR_s00002p00267790 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB5/NDH18 component NDH18, evm_27.TU.AmTr_v1.0_scaffold00002.530 0.8720146640062248 86 AMTR_s00029p00095840 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.88 0.8696605806813077 89 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor ATPRFB, HCF109, evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8689514564979861 93 AMTR_s00099p00074160 Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.55 0.8677592661157757 93 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.8661441708941918 94 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8659871013119532 95 AMTR_s00011p00263350 evm_27.TU.AmTr_v1.0_scaffold00011.202 0.8653913767451679 96 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein PSB28, evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8653383942350036 97