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  5. AMTR_s00011p00260300

AMTR_s00011p00260300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.190

No description available


Gene families : OG0001482 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00260300

Target Alias Description ECC score Gene Family Method Actions
AT1G31760 No alias SWIB/MDM2 domain superfamily protein 0.06 OrthoFinder output from all 47 species
GSVIVT01019325001 No alias No description available 0.03 OrthoFinder output from all 47 species
Mp8g06280.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016987 No alias not classified & original description: CDS=126-590 0.03 OrthoFinder output from all 47 species
Solyc08g075400.3.1 Solyc08g075400 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g25242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025309_P001 Zm00001e025309 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 47 122
No external refs found!