1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00011p00229900

AMTR_s00011p00229900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.109

No description available


Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00229900

Target Alias Description ECC score Gene Family Method Actions
AT4G25730 No alias FtsJ-like methyltransferase family protein 0.04 OrthoFinder output from all 47 species
Aob_g22298 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007467 No alias MRM2-type rRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.33G005200.1 Ceric.33G005200 MRM2-type rRNA methyltransferase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.16 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre12.g529500 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g09125 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023801001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os05g49230.1 LOC_Os05g49230 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Ppi_g01371 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g020810.2.1 Solyc11g020810 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g020820.2.1 Solyc11g020820 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g06497 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e032456_P001 Zm00001e032456 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 231 384
IPR002877 RNA_MeTrfase_FtsJ_dom 22 200
IPR012920 rRNA_MeTfrase_SPB1-like_C 597 790
No external refs found!