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  5. AMTR_s00011p00203340

AMTR_s00011p00203340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00011.71

Description : GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00011p00203340

Target Alias Description ECC score Gene Family Method Actions
AT5G66470 No alias RNA binding;GTP binding 0.08 OrthoFinder output from all 47 species
Adi_g012500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22081 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g12785 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g19160 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g19253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G026200.1 Ceric.25G026200 not classified & original description: pacid=50594372... 0.04 OrthoFinder output from all 47 species
Dac_g17788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01237 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g10149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018924001 No alias GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_05092 No alias GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g49220.1 LOC_Os05g49220 GTPase ERA-like, chloroplastic OS=Oryza sativa subsp.... 0.08 OrthoFinder output from all 47 species
Len_g24707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g20310.1 No alias GTPase ERA-like, chloroplastic OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
Msp_g10494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28699 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g01274 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g24926 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07554 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g11943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo75698 No alias GTPase ERA1, chloroplastic OS=Zea mays 0.04 OrthoFinder output from all 47 species
Spa_g10099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15511 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016149 translation release factor activity, codon specific IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 108 225
IPR004044 KH_dom_type_2 308 385
No external refs found!