1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00010p00262430

AMTR_s00010p00262430 (ATFTSH6, FTSH6,...)


Aliases : ATFTSH6, FTSH6, evm_27.TU.AmTr_v1.0_scaffold00010.465

Description : ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00262430

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00260320 evm_27.TU.AmTr_v1... Probable inactive ATP-dependent zinc metalloprotease... 0.02 OrthoFinder output from all 47 species
AT3G02450 No alias cell division protein ftsH, putative 0.01 OrthoFinder output from all 47 species
Adi_g011418 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114970 VAR2, FTSH2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14174 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Als_g08052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17362 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Aop_g15243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55623.t1 Aspi01Gene55623 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0079.g038410 No alias not classified & original description: CDS=51-2204 0.06 OrthoFinder output from all 47 species
Cba_g02707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13333 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.74 ATFTSH6, FTSH6 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic... 0.01 OrthoFinder output from all 47 species
Dac_g21713 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g12670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13134 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Dde_g07705 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011397001 ATFTSH6, FTSH6 Protein degradation.peptidase families.metallopeptidase... 0.01 OrthoFinder output from all 47 species
GSVIVT01036484001 No alias Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder output from all 47 species
Gb_32360 No alias component FtsHi of protein translocation ATPase motor complex 0.02 OrthoFinder output from all 47 species
Len_g07536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g21745 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.02 OrthoFinder output from all 47 species
Lfl_g04831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04989 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Msp_g07153 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g11426 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Ore_g26838 VAR2, FTSH2 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Ore_g45571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14965 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g17712 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0187.g025114 No alias not classified & original description: CDS=1-1989 0.01 OrthoFinder output from all 47 species
Solyc03g046340.3.1 Solyc03g046340 component FtsHi of protein translocation ATPase motor complex 0.02 OrthoFinder output from all 47 species
Spa_g25819 FTSH8 component *(FtsH1/2/5/6/8) of FtsH plastidial protease... 0.01 OrthoFinder output from all 47 species
Tin_g41961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007868_P001 Zm00001e007868 component FtsHi of protein translocation ATPase motor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000642 Peptidase_M41 375 413
IPR003959 ATPase_AAA_core 227 312
No external refs found!