AMTR_s00010p00259490 (THIC, PY,...)

Aliases : THIC, PY, evm_27.TU.AmTr_v1.0_scaffold00010.423

Description : Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC)

Gene families : OG0002896 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002896_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00010p00259490

Target	Alias	Description	ECC score	Gene Family Method
Adi_g075147	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.02	OrthoFinder output from all 47 species
Adi_g114023	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.02	OrthoFinder output from all 47 species
Ala_g12894	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.04	OrthoFinder output from all 47 species
Ala_g12895	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.02	OrthoFinder output from all 47 species
Aop_g21432	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0377.g067310	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000949.9	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dde_g10930	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.03	OrthoFinder output from all 47 species
Ehy_g02659	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01024789001	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.06	OrthoFinder output from all 47 species
Gb_08645	THIC, PY	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.06	OrthoFinder output from all 47 species
LOC_Os03g47610.6	THIC, PY, LOC_Os03g47610	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.04	OrthoFinder output from all 47 species
Lfl_g11025	THIC, PY	hydroxymethylpyrimidine phosphate synthase *(ThiC) &...	0.08	OrthoFinder output from all 47 species
Sam_g05003	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo120890	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.03	OrthoFinder output from all 47 species
Smo152730	THIC, PY	Coenzyme metabolism.thiamine pyrophosphate...	0.04	OrthoFinder output from all 47 species
Solyc06g006080.3.1	THIC, PY, Solyc06g006080	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.03	OrthoFinder output from all 47 species
Zm00001e005154_P001	THIC, PY, Zm00001e005154	hydroxymethylpyrimidine phosphate synthase (ThiC)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006772	thiamine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009228	thiamine biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0034308	primary alcohol metabolic process	None	Extended
BP	GO:0034309	primary alcohol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042723	thiamine-containing compound metabolic process	None	Extended
BP	GO:0042724	thiamine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016149	translation release factor activity, codon specific	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002817	ThiC/BzaA/B	161	583
IPR025747	ThiC-associated_dom	89	154

External Links

No external refs found!

AMTR_s00010p00259490 (THIC, PY,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation