Aliases : DRD2, NRPE2, NRPD2A, NRPD2, DMS2, evm_27.TU.AmTr_v1.0_scaffold00010.345
Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 2
Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00010p00249150 | |
Cluster | HCCA: Cluster_97 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G18090 | NRPD2B | nuclear RNA polymerase D2B | 0.03 | OrthoFinder output from all 47 species | |
AT3G23780 | DRD2, NRPE2,... | nuclear RNA polymerase D2A | 0.03 | OrthoFinder output from all 47 species | |
Aev_g39406 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene14108.t1 | DRD2, NRPE2,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene47966.t1 | NRPC2, Aspi01Gene47966 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.05G021300.1 | EMB1989, RPB2,... | component *(NRPB2) of RNA polymerase II complex &... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020554.9 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020614.124 | NRPC2 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre12.g542800 | NRPC2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01035963001 | DRD2, NRPE2,... | RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g28960.1 | NRPC2, LOC_Os03g28960 | DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g54840.1 | DRD2, NRPE2,... | subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... | 0.05 | OrthoFinder output from all 47 species | |
Len_g01921 | DRD2, NRPE2,... | component *(NRPE2) of RNA polymerase V complex &... | 0.05 | OrthoFinder output from all 47 species | |
Len_g03917 | DRD2, NRPE2,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Len_g16317 | EMB1989, RPB2, NRPB2 | component *(NRPB2) of RNA polymerase II complex &... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g15145 | NRPC2 | component *(NRPC2) of RNA polymerase III complex &... | 0.03 | OrthoFinder output from all 47 species | |
Smo443461 | NRPC2 | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.02 | OrthoFinder output from all 47 species | |
Solyc03g110880.4.1 | DRD2, NRPE2,... | subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | HCCA |
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | HCCA |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0000910 | cytokinesis | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | HCCA |
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | HCCA |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0007010 | cytoskeleton organization | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009250 | glucan biosynthetic process | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
MF | GO:0016597 | amino acid binding | IEP | HCCA |
BP | GO:0017038 | protein import | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0022402 | cell cycle process | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0043177 | organic acid binding | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
MF | GO:0046527 | glucosyltransferase activity | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0051273 | beta-glucan metabolic process | IEP | HCCA |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
No external refs found! |