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  5. AMTR_s00009p00268360

AMTR_s00009p00268360 (CP24, LHCB6,...)


Aliases : CP24, LHCB6, evm_27.TU.AmTr_v1.0_scaffold00009.423

Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component


Gene families : OG0003880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00268360
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.23 OrthoFinder output from all 47 species
Adi_g050814 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Adi_g084972 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Aev_g42764 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g46568 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ala_g04130 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Ala_g14893 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Als_g04793 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08113 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g08786 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g16767 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g01085 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g13957 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene36777.t1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38727.t1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene60192.t1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0186.g056695 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original... 0.1 OrthoFinder output from all 47 species
Cba_g06222 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g07812 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ceric.08G051300.1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original... 0.21 OrthoFinder output from all 47 species
Ceric.26G015400.1 CP24, LHCB6,... component *(LHCb6) of LHC-II complex & original... 0.21 OrthoFinder output from all 47 species
Dac_g26480 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.16 OrthoFinder output from all 47 species
Dcu_g02505 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Dcu_g09088 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g30591 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.25 OrthoFinder output from all 47 species
Dde_g16061 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g17973 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g05483 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01029789001 CP24, LHCB6 Photosynthesis.photophosphorylation.photosystem... 0.17 OrthoFinder output from all 47 species
Gb_27633 CP24, LHCB6 component LHCb6 of LHC-II complex 0.15 OrthoFinder output from all 47 species
LOC_Os04g38410.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.21 OrthoFinder output from all 47 species
Len_g14628 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Len_g18838 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Len_g37514 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Len_g37515 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Mp6g01650.1 CP24, LHCB6 component LHCb6 of LHC-II complex 0.26 OrthoFinder output from all 47 species
Msp_g01460 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Msp_g11766 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g03418 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Nbi_g21203 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g10858 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Ore_g18148 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01878 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g17874 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05601 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g30781 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g54300 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14091 No alias component *(LHCb6) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Smo271833 CP24, LHCB6 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder output from all 47 species
Solyc01g105030.3.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.18 OrthoFinder output from all 47 species
Solyc01g105050.3.1 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.19 OrthoFinder output from all 47 species
Spa_g42268 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g42269 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g48848 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Spa_g48849 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54507 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g54889 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g54890 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05852 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g21610 CP24, LHCB6 component *(LHCb6) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Zm00001e006561_P001 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.24 OrthoFinder output from all 47 species
Zm00001e041918_P001 CP24, LHCB6,... component LHCb6 of LHC-II complex 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 64 240
No external refs found!