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  5. AMTR_s00009p00241130

AMTR_s00009p00241130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.214

Description : Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00241130
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT1G63230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g18948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429462g0020 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.02 OrthoFinder output from all 47 species
MA_6283623g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
BP GO:0008219 cell death IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 678 710
IPR002885 Pentatricopeptide_repeat 16 45
IPR002885 Pentatricopeptide_repeat 400 430
IPR002885 Pentatricopeptide_repeat 790 820
IPR002885 Pentatricopeptide_repeat 300 330
IPR002885 Pentatricopeptide_repeat 227 276
IPR002885 Pentatricopeptide_repeat 437 485
IPR002885 Pentatricopeptide_repeat 334 381
IPR002885 Pentatricopeptide_repeat 826 871
IPR002885 Pentatricopeptide_repeat 512 556
IPR002885 Pentatricopeptide_repeat 718 766
IPR002885 Pentatricopeptide_repeat 49 98
IPR002885 Pentatricopeptide_repeat 580 626
IPR002885 Pentatricopeptide_repeat 120 168
No external refs found!