AMTR_s00009p00236210 (MURE, PDE316, ATMURE,...)

Aliases : MURE, PDE316, ATMURE, evm_27.TU.AmTr_v1.0_scaffold00009.196

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component

Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00236210
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT1G63680	MURE, PDE316, ATMURE	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases	0.14	OrthoFinder output from all 47 species
Als_g09620	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.06	OrthoFinder output from all 47 species
Aob_g05309	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.04	OrthoFinder output from all 47 species
Aop_g11920	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.03	OrthoFinder output from all 47 species
Azfi_s0008.g011499	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.08	OrthoFinder output from all 47 species
Cba_g03909	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.04	OrthoFinder output from all 47 species
Ceric.37G004600.1	MURE, PDE316,...	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.12	OrthoFinder output from all 47 species
Dcu_g08952	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.03	OrthoFinder output from all 47 species
GSVIVT01019746001	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.12	OrthoFinder output from all 47 species
Len_g12297	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.07	OrthoFinder output from all 47 species
Lfl_g03366	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.03	OrthoFinder output from all 47 species
MA_10436768g0010	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.02	OrthoFinder output from all 47 species
MA_961480g0010	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.02	OrthoFinder output from all 47 species
Mp6g20740.1	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.07	OrthoFinder output from all 47 species
Nbi_g12757	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Ore_g33830	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.04	OrthoFinder output from all 47 species
Pir_g64894	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Pp3c24_18820V3.1	MURE, PDE316,...	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases	0.02	OrthoFinder output from all 47 species
Smo148635	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Solyc08g081170.4.1	MURE, PDE316,...	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.07	OrthoFinder output from all 47 species
Zm00001e037912_P001	MURE, PDE316,...	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	IEA	Interproscan
MF	GO:0016874	ligase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013221	Mur_ligase_cen	300	505
IPR000713	Mur_ligase_N	212	288
IPR004101	Mur_ligase_C	526	609

External Links

No external refs found!

AMTR_s00009p00236210 (MURE, PDE316, ATMURE,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation