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  5. AMTR_s00009p00214490

AMTR_s00009p00214490 (UBC5,...)


Aliases : UBC5, evm_27.TU.AmTr_v1.0_scaffold00009.148

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBC-conjugating E2 protein


Gene families : OG0001369 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001369_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00214490
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Adi_g074544 UBC5 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.03 OrthoFinder output from all 47 species
Als_g03487 UBC5 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05593 UBC5 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0126.g048638 UBC5 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G027100.1 UBC5, Ceric.04G027100 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.02 OrthoFinder output from all 47 species
Dac_g45590 UBC5 E2 ubiquitin-conjugating enzyme *(UBC4) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e000387_P004 UBC4, ATUBC4,... ubiquitin-conjugating E2 protein 0.02 OrthoFinder output from all 47 species
Zm00001e004677_P001 UBC5, Zm00001e004677 ubiquitin-conjugating E2 protein 0.04 OrthoFinder output from all 47 species
Zm00001e038978_P001 UBC4, ATUBC4,... ubiquitin-conjugating E2 protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016881 acid-amino acid ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 12 142
No external refs found!