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  5. AMTR_s00009p00181330

AMTR_s00009p00181330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.113

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.large subunit


Gene families : OG0001924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00181330
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cba_g30900 No alias large subunit of TFIIa basal transcription factor... 0.02 OrthoFinder output from all 47 species
Zm00001e031330_P001 Zm00001e031330 large subunit of TFIIa basal transcription factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005672 transcription factor TFIIA complex IEA Interproscan
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005674 transcription factor TFIIF complex IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
BP GO:0032957 inositol trisphosphate metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP HCCA
MF GO:0051766 inositol trisphosphate kinase activity IEP HCCA
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP HCCA
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004855 TFIIA_asu/bsu 8 169
No external refs found!