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  5. AMTR_s00009p00180870

AMTR_s00009p00180870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.112

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIa basal transcription factor complex.large subunit


Gene families : OG0001924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00180870
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.24 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Zm00001e031330_P001 Zm00001e031330 large subunit of TFIIa basal transcription factor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005672 transcription factor TFIIA complex IEA Interproscan
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
CC GO:0005674 transcription factor TFIIF complex IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004855 TFIIA_asu/bsu 36 178
No external refs found!