Aliases : SIGF, SIG6, SOLDAT8, ATSIG6, evm_27.TU.AmTr_v1.0_scaffold00009.21
Description : RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor
Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.09 | OrthoFinder output from all 47 species | |
AT1G64860 | SIGB, SIG2,... | sigma factor A | 0.03 | OrthoFinder output from all 47 species | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.08 | OrthoFinder output from all 47 species | |
AT3G53920 | SIGC, SIG3 | RNApolymerase sigma-subunit C | 0.04 | OrthoFinder output from all 47 species | |
AT5G13730 | SIGD, SIG4 | sigma factor 4 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g013131 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g022157 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.07 | OrthoFinder output from all 47 species | |
Adi_g078223 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g088986 | ATSIG1, SIGB,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aev_g01395 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02431 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g12116 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g20576 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g27390 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g61402 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Aob_g09016 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Aob_g09018 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g09050 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g04446 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene43773.t1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene69203.t1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000670 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0003.g007447 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0012.g013021 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g03997 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.02G009200.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G083900.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.05G066000.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.12G082200.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.15G078000.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000842.1 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.01 | OrthoFinder output from all 47 species | |
Cre03.g194950 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g09532 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g10853 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g03021 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g05693 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.08 | OrthoFinder output from all 47 species | |
Dde_g23470 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g24733 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g06928 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g07794 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g14118 | SIGF, SIG6,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g20636 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01019326001 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01024261001 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01025717001 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01032193001 | SIGD, SIG4 | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01035330001 | SIGC, SIG3 | RNA biosynthesis.organelle... | 0.06 | OrthoFinder output from all 47 species | |
Gb_05479 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Gb_23845 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Gb_37602 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os03g16430.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os08g14450.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os11g26160.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.07 | OrthoFinder output from all 47 species | |
MA_10429585g0010 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.07 | OrthoFinder output from all 47 species | |
Mp4g13380.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g15030.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Msp_g08661 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g24180 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g09780 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g13789 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g21262 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.08 | OrthoFinder output from all 47 species | |
Ore_g08024 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g25320 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g32531 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g33804 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Pir_g12897 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g64419 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g07253 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g06448 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g07492 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g30557 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0017.g007071 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0161.g023922 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0198.g025553 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g13485 | No alias | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g19255 | No alias | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g24688 | No alias | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Smo117159 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.06 | OrthoFinder output from all 47 species | |
Solyc01g081490.3.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.11 | OrthoFinder output from all 47 species | |
Solyc03g097320.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.09 | OrthoFinder output from all 47 species | |
Solyc06g072710.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Solyc08g065970.3.1 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.06 | OrthoFinder output from all 47 species | |
Solyc09g008040.3.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.07 | OrthoFinder output from all 47 species | |
Spa_g13112 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g16166 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g06059 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001198_P005 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e011616_P008 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e021420_P001 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.1 | OrthoFinder output from all 47 species | |
Zm00001e021683_P001 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032586_P001 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
MF | GO:0016987 | sigma factor activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004556 | alpha-amylase activity | IEP | HCCA |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
MF | GO:0016160 | amylase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
MF | GO:0045182 | translation regulator activity | IEP | HCCA |
MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |