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  5. AMTR_s00008p00166810

AMTR_s00008p00166810 (ATISA3, ISA3,...)


Aliases : ATISA3, ISA3, evm_27.TU.AmTr_v1.0_scaffold00008.90

Description : Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme


Gene families : OG0001139 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00166810

Target Alias Description ECC score Gene Family Method Actions
AT1G03310 DBE1, ATISA2, BE2, ISA2 debranching enzyme 1 0.02 OrthoFinder output from all 47 species
AT2G39930 ATISA1, ISA1 isoamylase 1 0.03 OrthoFinder output from all 47 species
Aev_g04122 ATISA3, ISA3 starch-debranching isoamylase *(ISA3) & original... 0.02 OrthoFinder output from all 47 species
Ceric.31G027800.1 ATISA1, ISA1,... component *(ISA1) of ISA1-ISA2 isoamylase heterodimer &... 0.04 OrthoFinder output from all 47 species
Cre03.g207713 ATISA3, ISA3 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species
Cre17.g698850 ATISA3, ISA3 Isoamylase 2, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g05762 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.06 OrthoFinder output from all 47 species
GSVIVT01035168001 ATISA1, ISA1 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Len_g01901 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.02 OrthoFinder output from all 47 species
Msp_g20546 DBE1, ATISA2, BE2, ISA2 component *(ISA2) of ISA1-ISA2 isoamylase heterodimer &... 0.05 OrthoFinder output from all 47 species
Sam_g28970 No alias component *(ISA1) of ISA1-ISA2 isoamylase heterodimer &... 0.03 OrthoFinder output from all 47 species
Sam_g35744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g009220.4.1 ATISA3, ISA3,... starch debranching enzyme. starch-debranching... 0.04 OrthoFinder output from all 47 species
Solyc07g014590.4.1 ATISA1, ISA1,... starch debranching enzyme. starch-debranching... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
MF GO:0009976 tocopherol cyclase activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 189 547
IPR004193 Glyco_hydro_13_N 20 119
No external refs found!