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  5. AMTR_s00008p00109510

AMTR_s00008p00109510 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00008.45

Description : Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera


Gene families : OG0002290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00008p00109510

Target Alias Description ECC score Gene Family Method Actions
AT5G08650 No alias Small GTP-binding protein 0.07 OrthoFinder output from all 47 species
Ala_g02382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09651 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g02197 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04580 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene43914.t1 Aspi01Gene43914 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0072.g036902 No alias not classified & original description: CDS=1-1971 0.06 OrthoFinder output from all 47 species
Cba_g17085 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G059400.1 Ceric.02G059400 not classified & original description: pacid=50584081... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000912.22 No alias Translation factor GUF1 homolog, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.140 No alias Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor 0.02 OrthoFinder output from all 47 species
Cre03.g165000 No alias Translation factor GUF1 homolog, chloroplastic... 0.05 OrthoFinder output from all 47 species
Dac_g07140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01022409001 No alias Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera 0.07 OrthoFinder output from all 47 species
LOC_Os02g06300.1 LOC_Os02g06300 Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.1 OrthoFinder output from all 47 species
Len_g04338 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g03115 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp7g18810.1 No alias Translation factor GUF1 homolog, chloroplastic OS=Vitis... 0.03 OrthoFinder output from all 47 species
Msp_g11300 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g47582 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g10787 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g19015 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g09463 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18021 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g10075 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g43097 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g39971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo407721 No alias Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
Solyc04g015450.3.1 Solyc04g015450 Translation factor GUF1 homolog, chloroplastic... 0.09 OrthoFinder output from all 47 species
Spa_g04229 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g01086 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e025200_P002 Zm00001e025200 Translation factor GUF1 homolog, chloroplastic OS=Oryza... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR013842 LepA_CTD 573 679
IPR004161 EFTu-like_2 290 360
IPR000795 T_Tr_GTP-bd_dom 89 266
IPR000640 EFG_V-like 484 570
No external refs found!