1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00007p00259840

AMTR_s00007p00259840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.320

No description available


Gene families : OG0006576 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006576_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00259840
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT3G43540 No alias Protein of unknown function (DUF1350) 0.03 OrthoFinder output from all 47 species
Ala_g05655 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09846 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g12832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G009300.1 Ceric.26G009300 not classified & original description: pacid=50599755... 0.05 OrthoFinder output from all 47 species
Dcu_g14711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_23956 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_23958 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10098847g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_8789383g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g02740.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020141 No alias SIRTUIN-type histone deacetylase *(SRT) & original... 0.03 OrthoFinder output from all 47 species
Sam_g52124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo84597 No alias No description available 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR010765 DUF1350 222 365
IPR010765 DUF1350 57 197
No external refs found!