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  5. AMTR_s00006p00267030

AMTR_s00006p00267030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.296

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00006p00267030

Target Alias Description ECC score Gene Family Method Actions
AT1G60200 No alias splicing factor PWI domain-containing protein / RNA... 0.03 OrthoFinder output from all 47 species
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17534 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g58521 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G082400.1 Ceric.06G082400 pre-mRNA splicing factor *(RBM25) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.13 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g39951 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39469 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
MA_96952g0010 No alias pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species
Mp4g16880.1 No alias pre-mRNA splicing factor (RBM25) 0.06 OrthoFinder output from all 47 species
Pir_g11390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g004999 No alias pre-mRNA splicing factor *(RBM25) & original... 0.03 OrthoFinder output from all 47 species
Sam_g16365 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24199 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Smo440812 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc05g005620.4.1 Solyc05g005620 pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species
Spa_g40329 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g18982 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022382_P002 Zm00001e022382 pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 220 289
IPR002483 PWI_dom 853 919
No external refs found!