LOC_Os09g25550.1


Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana (sp|o65567|pp342_arath : 878.0)


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g25550.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
MA_10345546g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_157201g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 Archaeplastida
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 Archaeplastida
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.07 Archaeplastida
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
MA_157201g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.08 LandPlants
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 889 936
IPR002885 Pentatricopeptide_repeat 823 864
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 753 782
IPR002885 Pentatricopeptide_repeat 648 674
IPR002885 Pentatricopeptide_repeat 374 398
IPR002885 Pentatricopeptide_repeat 613 642
IPR002885 Pentatricopeptide_repeat 787 817
IPR002885 Pentatricopeptide_repeat 543 566
IPR002885 Pentatricopeptide_repeat 719 747
IPR002885 Pentatricopeptide_repeat 477 503
IPR002885 Pentatricopeptide_repeat 579 604
No external refs found!