1. Home
  2. Species
  3. Angiopteris evecta
  4. Sequence
  5. Aev_g05483

Aev_g05483


Description : associated component *(HDC1) of histone deacetylase machineries & original description: none


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g05483
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Aob_g03580 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Azfi_s0335.g065518 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Cba_g36633 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ceric.1Z065200.1 Ceric.1Z065200 associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Dcu_g03126 No alias associated component *(HDC1) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
MA_18805g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g12140.1 No alias associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Msp_g25492 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ore_g06630 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ppi_g03202 No alias associated component *(HDC1) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Tin_g13819 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e010714_P003 Zm00001e010714 associated component HDC1/Rxt3 of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Zm00001e022328_P001 Zm00001e022328 associated component HDC1/Rxt3 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 472 513
No external refs found!