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  5. AMTR_s00004p00093740

AMTR_s00004p00093740 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.76

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component


Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00093740

Target Alias Description ECC score Gene Family Method Actions
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.04 OrthoFinder output from all 47 species
Ala_g02487 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Aob_g23408 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene22869.t1 Aspi01Gene22869 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22871.t1 Aspi01Gene22871 component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Cba_g05289 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ceric.09G054000.1 Ceric.09G054000 component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.07 OrthoFinder output from all 47 species
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Dac_g22779 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Dcu_g13304 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Dde_g50453 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ehy_g01609 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
LOC_Os03g44900.1 LOC_Os03g44900 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Len_g47292 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.06 OrthoFinder output from all 47 species
Lfl_g02194 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
MA_16801g0010 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Ore_g18536 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Pnu_g13489 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Solyc12g019860.2.1 Solyc12g019860 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Tin_g05223 No alias component *(NOT3) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Zm00001e005243_P002 Zm00001e005243 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Zm00001e012376_P003 Zm00001e012376 component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007282 NOT2/3/5_C 761 895
IPR007207 Not_N 3 237
No external refs found!