AMTR_s00004p00017060 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.3

No description available


Gene families : OG0000771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000771_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00017060

Target Alias Description ECC score Gene Family Method Actions
AT5G20670 No alias Protein of unknown function (DUF1677) 0.03 OrthoFinder output from all 47 species
AT5G25840 No alias Protein of unknown function (DUF1677) 0.06 OrthoFinder output from all 47 species
Als_g36991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11644 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.08G030200.1 Ceric.08G030200 not classified & original description: pacid=50637544... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10260.1 LOC_Os01g10260 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g46300.1 LOC_Os03g46300 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g09900.1 LOC_Os06g09900 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g57475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_5048457g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_764231g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g03717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g061270.1.1 Solyc08g061270 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc09g082190.1.1 Solyc09g082190 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012876 DUF1677_pln 2 87
No external refs found!