1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00003p00264590

AMTR_s00003p00264590 (LDL2,...)


Aliases : LDL2, evm_27.TU.AmTr_v1.0_scaffold00003.362

Description : Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase


Gene families : OG0003252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003252_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00264590

Target Alias Description ECC score Gene Family Method Actions
Adi_g058521 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10783 FLD flowering time factor *(FLD) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001497.8 SWP1, ATLSD1,... Lysine-specific histone demethylase 1 homolog 2 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os04g47270.1 FLD, LOC_Os04g47270 lysine-specific demethylase (LDL/KDM1) 0.03 OrthoFinder output from all 47 species
Lfl_g02256 FLD flowering time factor *(FLD) & original description: none 0.02 OrthoFinder output from all 47 species
Smo79938 FLD Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Zm00001e015890_P001 SWP1, ATLSD1,... lysine-specific demethylase (LDL/KDM1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 56 140
IPR002937 Amino_oxidase 166 593
No external refs found!