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  5. AMTR_s00003p00213880

AMTR_s00003p00213880 (UPL6,...)


Aliases : UPL6, evm_27.TU.AmTr_v1.0_scaffold00003.207

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase


Gene families : OG0001555 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001555_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00213880

Target Alias Description ECC score Gene Family Method Actions
AT3G17205 UPL6 ubiquitin protein ligase 6 0.04 OrthoFinder output from all 47 species
AT3G53090 UPL7 ubiquitin-protein ligase 7 0.04 OrthoFinder output from all 47 species
Aev_g04174 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07294 UPL6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15620.t1 UPL6, Aspi01Gene15620 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0303.g063774 UPL6 E3 ubiquitin ligase *(UPL6) & original description: CDS=387-992 0.03 OrthoFinder output from all 47 species
Ceric.05G020700.1 UPL6, Ceric.05G020700 E3 ubiquitin ligase *(UPL6) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z062300.1 UPL7, Ceric.1Z062300 E3 ubiquitin ligase *(UPL6) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g02012 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10609 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15093 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034942001 UPL6 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_22218 UPL7 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
LOC_Os03g47949.1 UPL7, LOC_Os03g47949 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
LOC_Os05g06690.1 UPL6, LOC_Os05g06690 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Lfl_g08600 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10260113g0010 UPL7 monomeric E3 ubiquitin ligase (HECT) 0.02 OrthoFinder output from all 47 species
Nbi_g16882 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05330 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005368 UPL7 E3 ubiquitin ligase *(UPL6) & original description: CDS=254-3667 0.03 OrthoFinder output from all 47 species
Sam_g16308 No alias E3 ubiquitin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g057900.3.1 UPL6, Solyc01g057900 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
Tin_g13531 UPL6 E3 ubiquiTin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012275_P001 UPL7, Zm00001e012275 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Zm00001e031128_P003 UPL6, Zm00001e031128 monomeric E3 ubiquitin ligase (HECT) 0.05 OrthoFinder output from all 47 species
Zm00001e039899_P001 UPL6, Zm00001e039899 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000569 HECT_dom 725 1011
No external refs found!